Heather Wilson, one of the authors of the article, comments:
Antibiotics target a variety of molecules in bacteria that can kill the bacteria or halt their growth. Successful treatment of an infection relies on multiple factors, including a balance between the appropriate antibiotic treatment and the actions of the immune system. Sterility in any infection is not necessary except in a few key circumstances.
The key to the current recommendations on antibiotic duration is based on two main points. First, we now have empirical evidence that shorter courses are nearly always as effective as standard ones, whereas previous recommendations were largely arbitrary. Second, it was previously thought that you had to use enough antibiotic to prevent the development of resistance. We now understand that many of the adverse effects that are related to antibiotic use, for example antibiotic resistance, candidiasis and Clostridium difficile infection, are increased with prolonged antibiotic therapy.
In terms of resistance, it is often not the initial infecting organism that is the problem. Instead longer antibiotic exposures result in greater pressure to select for antibiotic resistance in other commensal bacteria that may then go on to cause infection in the future.
The idea of having syndrome-based prescribing information linked into prescribing software is a good one. It is something that I hope to see in the future, but as far as I know is not available now. In the meantime, guidance may be sought from local guidelines. The latest version of Therapeutic Guidelines: Antibiotic has new resources to support primary care practitioners in antimicrobial prescribing, including shared decision-making with patients.