A number of molecular genetic markers have become available that predict a patient’s response to targeted therapy. The most commonly used of these are mutations in the KRAS gene (Kirsten rat sarcoma-2 virus oncogene) which are indicative of lack of response to therapy with anti-epidermal growth factor receptor (EGFR) antibodies. Similarly, mutations in the EGFR gene predict sensitivity or resistance to EGFR tyrosine kinase inhibitors, and mutations in the BRAF gene (proto-oncogene B-Raf) predict response to BRAF inhibitors.
Lung cancer
A number of international consensus groups have recommended testing for EGFR mutations in non-small cell lung cancer as a prerequisite to treatment with EGFR tyrosine kinase inhibitors, such as gefitinib or erlotinib. More than 80% of these EGFR mutations are either a single nucleotide substitution in exon 21 (p.Leu858Arg:L858R) or small deletions in exon 19.8 These mutations are termed classical activating mutations because they both activate the receptor tyrosine kinase and respond to the EGFR inhibitors gefitinib and erlotinib.
Not all EGFR gene mutations predict sensitivity to treatment. Primary and secondary resistance has been observed in non-small cell lung carcinoma, and a single mutation in exon 20 of the EGFR gene (p.Thr790Met:T790M) accounts for approximately 50% of acquired resistance to anti-EGFR therapy.9 Amplification of the MET oncogene is another common mechanism of acquired resistance and is associated with a poor prognosis.10
Importantly, high response rates to gefitinib and erlotinib can be achieved in appropriate populations of non-small cell lung cancer based on stratification by EGFR gene mutation status compared to the treatment of unselected populations with these inhibitors.
Colorectal cancer
Anti-EGFR monoclonal antibodies are increasingly being used in both first- and second-line treatment of colorectal cancer.11 However, mutations in genes downstream of EGFR in the mitogen-activated protein kinase (MAPK) pathway can predict non-response to these therapies. Anti-EGFR therapy with cetuximab or panitumumab is generally not indicated if the tumour carries a mutation in exon 2 of the KRAS gene. These mutations commonly occur at codons 12 and 13. However, recent data suggest that not all KRAS mutations in these codons are equal in their prediction of response to cetuximab.12
Melanoma
Mutations in the BRAF gene have been identified in over 40% of melanomas, and specific inhibitors to a mutated form of the BRAF protein (BRAF V600E) have produced a clinical response in phase III trials (Aust Prescr 2012;35:134-5).13 The most prevalent mutation is a single nucleotide substitution (c.1799T>A) that results in an amino acid substitution of glutamic acid for valine in the BRAF protein. Similar to KRAS, other BRAF mutations may result in varying responses to treatment.
While cutaneous melanomas commonly harbour mutations in the BRAF gene, melanomas arising from acral and mucosal surfaces tend to harbour KIT gene mutations (8% of tumours) that predict response to another tyrosine kinase inhibitor, imatinib.
A role for BRAF mutations in the pathogenesis, diagnosis and targeted therapy of diseases beyond melanoma is also possible. In a recent report, all of 40 patients with hairy cell leukaemia carried the BRAF p.Val600Glu(V600E) mutation.14